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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagtaactttgcagagctagcgtttgattcctgtatacagttttcaagtgtaatgatgcttcttggtttttag

Basic information

species Arabidopsis thaliana
transcript AT3G46040.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46040.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagtaactttgcagagctagcgtttgattc-ctgtatacagttttcaagtgtaatgatgcttcttggtttttag
|||   |||||||||||||||||||| || ||||||||||| ||||||||||| || || || || |||||||||||||| |  ||||||||    || |||  | |   ||  | |    ||     ||  |||  | | || | |     | ||       |  | ||   || ||||
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgttagttctcaatctcgt---gccccatttcaattggcagcattccgaggatacgtacctgattagtgctatattattag

upper sequence: AT3G46040.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagtaactttgcaga-gctagcgtttgattcctgtatacagttttcaagtgtaatgatgcttct--tggtttttag
|||   |||||||| || |||||||  || ||||||||||| ||||||||||| || || || || |||||||||||||| |  ||||||||    ||||||  ||||| |      |  | ||     ||  ||  ||  || | |    || ||  | ||||  || |  || | | |||
AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtcca-tgatcattgtgctgttatgtag

upper sequence: AT3G46040.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G000801_T01 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGg-tatgctagtaactt----tgcagagctagcgtttgattcctgtatacagttttcaagtgtaatgat-gcttcttggtttttag----------------------------------
         ||||||||||||||||| || ||||||||||| |||||||| || || || || || ||||| |||||| | |  ||||||||    || || ||   | || | ||    | |   | |       ||  || | |    ||  |  |    || ||| |  |       |   |                                  
---------TACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGACCGTCGTCCAAGGTGATCATTAAGTTCATGACGGTCATGCAGCGTCATGGATACATTGgtgagttcgattacgtggatgatcacagagcccggaagcttgtggtggaactgaacgatagactaaacaaatgcggtgtaattagcccctggttcgactttggaataaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412289|gb|EG454881.1|EG454881
EST:     GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|125034567|gb|EL106836.1|EL106836
EST:     TATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCT
genomic: TATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCT
EST: gi|116402443|gb|EG445035.1|EG445035
EST:     GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGGGTATGTTGATGACCACAGGTCTGGTAGGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|125282356|gb|EL296441.1|EL296441
EST:     TGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: TGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|116401733|gb|EG444325.1|EG444325
EST:     CCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTCCATTGGCGAGTTTGGGTATGTTGATGACCCCAGGTCTGGTAGGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|116401724|gb|EG444316.1|EG444316
EST:     GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGGGTATGTTGATGACCACAGGTCTGGTAGGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|116462642|gb|EG505234.1|EG505234
EST:     GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|164150567|gb|ES106104.1|ES106104
EST:     AAGTTCCTTATCGTCATGC-AAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: AAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|125036735|gb|EL109004.1|EL109004
EST:     TTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: TTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|164147887|gb|ES104385.1|ES104385
EST:     AAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: AAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|125195849|gb|EL210803.1|EL210803
EST:     ATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: ATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
EST: gi|116412290|gb|EG454882.1|EG454882
EST:     CCCTTTTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACG                         GTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG
genomic: GCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGgtatgctagt ... tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTG