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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGTCTCAGCATGTTGCCTGTTGTTGCAGCCATTCTAGCTGATTCTTTCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTgtaagtccaagactctttctgttgcatcaattctcttttgtggtctgataagctcaccagtatatgaaaacgtttgtttag

Basic information

species Arabidopsis thaliana
transcript AT3G45680.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063349|gb|DR359106.1|DR359106
EST:     TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTT                         GGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
genomic: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTgtaagtccaa ... gtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
EST: gi|19877671|gb|AU238502.1|AU238502
EST:     TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTT                         GGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
genomic: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTgtaagtccaa ... gtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG