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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGCTATTAAGTTCCCGACAATGGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaatgattatcttctcaggcttccatgaacatagcatactcgttttattactcgttttattaaatgcgttgatctttaacataaaag

Basic information

species Arabidopsis thaliana
transcript AT3G44880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G19800.1 (Glycine max), 5'ss of exon 2
CTTGTGCTATTAAGTTCCCGACAATGGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaatgattatcttc--tcaggcttccatgaaca-tagcatactcgtttta-ttactcgttttattaaatgcgttgatctttaacataaaag---------------------------------------------------------------------
| ||||| | || |||||| ||  ||||||| || ||| | |||||||| ||||||||||| ||||||||||| | ||| ||  |     | || || | ||||   |  | |||   |||  |   | |   | ||| | |   | | |  || || ||      ||||| |     ||| ||| |     ||  |                                                                      
CATGTGCCACTAGGTTCCCTACCTTGGTGTCCCAGGGTTTGCTCTTTGTATGGCCTGATGAGAATGGTTGGGAGAAAGCAAAGGCCTCCAAGCCTCCAATgtaattgatttaatttaattcggttttgttctgaggaataatgttaaattaattgtaattgggtcctttataatggatgtt-atcctgtgtttattattttatgttggctaaggagtgttttgttttgtgttttattgacctggatggtaaatttgtgtttgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476112|gb|EG518704.1|EG518704
EST:     TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAG                         GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
genomic: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
EST: gi|116476111|gb|EG518703.1|EG518703
EST:     TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAG                         GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
genomic: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
EST: gi|125080641|gb|EL142168.1|EL142168
EST:     GCCTGATGAAAATGGTTGGGATAGTTAGCCAATTCAATTGAACCCCCTAG                         GTTGCCGGATGATTTCGATAAACCGGA
genomic: GCCTGATGAAAATGGTTGGGATAG--AGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGA
EST: gi|124781718|gb|EH871661.1|EH871661
EST:     TTGAACCCCCTAG                         GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
genomic: TTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG