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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgatagagtaatttattcaacctttgtagggtctgatcgatttctatgcaaatgggattcaacataggatagagacttttgcaagttgggatctgattagagttatatatgtagaattgaaataagtatgagtttgaatgtttgatgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G44620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44620.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0061g01530.t01 (Vitis vinifera), 5'ss of exon 2
AAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgatag--agtaatttattcaacctttgtagggtctgatcgatttctatgcaaatgggattcaacataggatagagacttttgcaagttgggatctgattagagttatatatgtagaattgaaataagtatgagtttgaatgtt--tgatgtttgcag
||| | || |||||||||||||| ||  | || || || ||| || |||||||||| ||||| ||||||||||| |||||||||||  | || || | |||| |   |     |  |   |||||||  |     | | ||| | |  ||  |  ||||  ||||    |      | | | ||||| ||   | | |  || ||    || |||              ||| |||   |||   ||||  || || ||| ||
AAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATTTTGATCTCATCCTTGCAATGGACAAGCAAAATAGAGgtgggaaaagattaagagggtattcaagtt----ggtgactgcttgggtttgaatcaaactggatggtgctc----tggtgtctttt-cattcttgtaattggttttttttttat--------------taattatttcttttggtgttgatgttgcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124742594|gb|EH833756.1|EH833756
EST:     TTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG                         AGGATATATTGAAGGCTTATAAAATGTGTGGAAAGCCAGAGGGAATTTCCC
genomic: TTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAA--TGTGTGGAAAGCCAGAGGGAATTTCCC
EST: gi|116425047|gb|EG467639.1|EG467639
EST:     TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG                         AGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
genomic: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
EST: gi|116425046|gb|EG467638.1|EG467638
EST:     TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG                         AGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
genomic: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC