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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTgtatggaatcatcactcttttgccttttgattatctgaaaacatttacattatcagtcacacatataacattttgctttgagtcatatag

Basic information

species Arabidopsis thaliana
transcript AT3G43740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 2
GGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTgtatggaatcatcactcttttgccttttgattatctgaaaacatttacattatcagtcacacatataacattttgctttg-agtcatatag-------------
|||| | || || || ||| ||||||||||| | |||||||||||||||||||| || ||| |||| ||||||||||   || | |||   |||| || |  || |     || |||   | | | ||||    | ||     |||    || | | ||| |              
GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAAGCTGGAGCATCTACAGTATCTgtatgttttc-taact---ttgctttatattttttccccaatattgtgactttaagtctgttaaatgtggctttatgatgcattgatacaatatgtgtatcata

upper sequence: AT3G43740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G04520.1 (Glycine max), 5'ss of exon 2
GGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTgtatggaatcatcactcttttgccttttgattatctgaaaacatttacattatcagtcacacatataacattttgctttgagtc-atatag----------
|||| | || || || ||| ||||||||||| | |||||||||||||||||||| || ||| |||| ||||||||||   || | ||| |  |   | ||  || ||  || |   | |  || | ||||    | ||      ||    ||  |  | | |           
GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAAGCTGGAGCATCTACAGTATCTgtatgttttc-taactttgctttatattttttttcccaatattgtgagtttgtaagtctgttaaatgtgcccttatgatgcattgacacaatacatgtatc

upper sequence: AT3G43740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 2
GGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTgtatggaatcatcactcttttgccttttgattatctgaaaacatttacattatcagtcacacatataacattttgctttg-agtcatatag---------------
||| ||||| ||||||||| | ||||| ||||| ||||||||||||||||||||  |  || | || ||||||||||      |  ||||||  |  ||| ||  |  ||  |  | |  ||  | |||     ||   |   ||||  ||| | | || ||                
GGACTTGGGTAATTCAAACCTCTCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatg----tttttctctttgactgtttaat-gtaggaggat-tgtgaatccttagttttttattctatggtttgtcttgcaataatctatggtatgttgagaggg

upper sequence: AT3G43740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 2
GGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTgtatggaatcatcactcttttgccttttgattatctgaaaacatttacatta-tcagtcacacatataacattttgctttgagtcatatag----------------------------------------------------------------------------------------
|||  | || | |||||||||||| || ||||||||||||||||| ||||| || |||||| | || |||||||| |      | | | |  ||  ||   |||  |  | |||   | | ||  |  ||  || || | |  |||   |  ||||  | ||                                                                                         
GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAACTCGAACATCTGCAGTATCTgtaagtgtcttttaatttgctg--ttaaaatttgccaataacgagtgcgttgcttggtgtcaaatgttagctttatgtaagagttctctatctgaacaattgttgatgtcatgtgatgtttggagcttataattcaaagccacagggaaatgaaattaaattaagttcttctcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194671|gb|EL209625.1|EL209625
EST:     GGGAAGACTTGAACATTTACAATATCT                         TGAACTCTACAAAAACGAGATTCAAGGAACTATACCTTCTGAGCTTGGAAA
genomic: GGGAAG-CTTGAACATTTACAATATCTgtatggaatc ... agtcatatagTGAACTCTACAAAAACGAGATTCAAGGAACTATACCTTCTGAGCTTGGAAA