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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttgattctaatcttctctttgtcttaattctaagcaagtgtgacaaaaatgtaatctctctcttgtgaaag

Basic information

species Arabidopsis thaliana
transcript AT3G43540.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124738783|gb|EH829981.1|EH829981
EST:     CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG                         GTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCC
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCC
EST: gi|164103506|gb|ES042986.1|ES042986
EST:     CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG                         GTTAATGCCATTATTTCATTCAATAACAAATCAGCGACA
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACA
EST: gi|125032517|gb|EL104786.1|EL104786
EST:     CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG                         GTTAATGCCATTATTTCATTCAATAACAAAT
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAAT