1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggtttctctcttttcttcccaattttgattcttttcttctcttttactcatatcctctcttgggttttctctgtgtatagatcaaatctgtttta...
species | Arabidopsis thaliana |
transcript | AT3G42790.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069050|gb|DR364807.1|DR364807
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069049|gb|DR364806.1|DR364806
genomic: ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|164105669|gb|ES025254.1|ES025254
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: TTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069051|gb|DR364808.1|DR364808
genomic: TTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069052|gb|DR364809.1|DR364809
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069048|gb|DR364805.1|DR364805
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069046|gb|DR364803.1|DR364803
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|124905636|gb|EH979716.1|EH979716
genomic: ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGEST: gi|86069047|gb|DR364804.1|DR364804
genomic: ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTG
EST: ATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|86069054|gb|DR364811.1|DR364811
genomic: ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|125043921|gb|EL116190.1|EL116190
genomic: ACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ATGTTCAAGAGTTTTACCTAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAEST: gi|116471935|gb|EG514527.1|EG514527
genomic: ATGTTCAAGAGTTTTACC-AACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
EST: ATGTTCAAGAGTTTTACCAACAATGTGACCCTG AGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
genomic: ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggttt ... gggttttcagAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTCAAGAGTTTTACCAACAATGTGACCCTGgttagggtttctctcttttcttcccaattttgattcttttcttctcttttactcatatcctctcttgggttttctctgtgtatagatcaaatctgtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agatcaaa