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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCTGTAACTAAGAATAGACCGGTGTTTAGATTGTCTTTGGAGAAAACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggtttgtgatttcaatcatttcatagattcttgtttgaaaataacaatctttttctgattgttttgtttatgtgacacaactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27350.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125020842|gb|EL093111.1|EL093111
EST:     ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACT
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACT
EST: gi|164117013|gb|ES045524.1|ES045524
EST:     CCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
genomic: CCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
EST: gi|124792039|gb|EH881718.1|EH881718
EST:     ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: gi|125129716|gb|EL173334.1|EL173334
EST:     TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
genomic: TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATT
EST: gi|164209065|gb|ES044728.1|ES044728
EST:     ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGG
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGG
EST: gi|124948360|gb|EL024116.1|EL024116
EST:     ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: gi|124790215|gb|EH879894.1|EH879894
EST:     ACTATCCCNCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCG
EST: gi|125205670|gb|EL220624.1|EL220624
EST:     ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAG                         CGAAAGACCGA
genomic: ACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggt ... acaactgcagCGAAAGACCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAATCTGTAACTAAGAATAGACCGGTGTTTAGATTGTCTTTGGAGAAAACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGgtaatatggtttgtgatttcaatcatttcatagattcttgtttgaaaataacaatctttttctgattgttttgtttatgtgacacaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG