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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag

Basic information

species Arabidopsis thaliana
transcript AT3G26950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatccttt-ttctctatattaactgaactgttactatgcttg--ttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
|| |  | |||||||| ||||| || |||||||| ||||| |||||| |||||||||||||  | ||||||||| | ||  | ||||| || || ||||||||| |     ||   |||||||  ||| |  ||  |||  |  |   | | | || | | |   | || ||||  ||   |||  || |||||| |                        
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgc--atttactctcaattatttatcttccttatctatcgggtt-tgaatacgttggacctatattttgactttcctgtgatgattatatatgagata------------------

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
|| || | |||||||||||||| || |||||||| |||||||||||| | | ||| |||||  | ||||||||| |||| |||||||| || || || ||||||||     | |  |||   | |||||  | | |||    |||  ||  |||||   ||   | | | |      |||  || | |  ||||  ||||||  |             
AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactct-gctacttttcatgtgtatct-ttgatttg--actat-tatgcgattggtcggaagcattgagttctatgaatttgcttcttttcc-------------

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
| || || || ||||| ||||| || |||||||| ||| |||||||  | |||||| |||| |||||| ||||| | ||||||||||||||||| |||||||||||  |||||||||| ||| ||||| | | |   ||    || ||    || |  |  |||  |  ||   | | | |   | |||  |||     | |||              
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatat--tggttctttcccaagcctttctttttcatttttaagagctaac-cttttttaattgatgcctgaaatttcttttagggtta-gtttggcggtatct--------------

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G26840.1 (Glycine max), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgt-tatttgtcttgtttatatttctttctttctctgggtatc--ctcag-------------------------
                                            ||  | |||||| |||| |||||||||||| | ||||||||||||||||| |||||||||||  |||||||||| ||| ||||| | | |   ||    ||  |     | | ||| || || |   ||  |     |||   |  ||  |  |  ||||| |  |  |    |  |                         
--------------------------------------------ACTGCTGCAGCACTGAGTATAATGTTAAACCGGTCCTTGATCATTGGCCAAACCAGGCATAT--TGGTTCTTTCCCAAGCCTTTCTTTTTCATTTTTAAGAGgtaacctttttctttttttaatggatgcctgaaattctaactagtaactagtagtttctttaagggttagtttggctgtatccctttaaagatgggggct

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
|  ||   || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||||| || |||||||||||  ||||| |||||||| ||||| |   | |  |   |  ||| |||  |   ||    ||  || | | |  ||   | |  | | | | |   |||  ||| |        
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatat--tggttttttctcaagcctttctaatttttct--tttcacttttaagaacttt----tacattctctcaactgaaatttagagaatccatg--ttcattggct--------

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
---------------------------------------------------------------AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
                                                               |  ||   || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||||| || |||||||||||  ||||| |||||||| ||||| |                                                                                        
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatat--tggttttttctcaagcctttctaat-------------------------------------------------------------------------------------

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G07210.1 (Glycine max), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcc---tttttctctatattaactg--aactgttactatgct-tgttgtagtttgtgttatttgtct-tgtttatatttctt--tctttctctgggtatcctcag---
        || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||  | || |||||||||||  |||||||||||||| ||    ||   |   | || |||   ||  | | |||   | | |   |  |    ||    || | | |  || ||| ||  || || | ||  | || |  |   
--------GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATAT--TGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag

upper sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatccttttt-ctctatatt---aactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
|  || ||||||| |||||||| || |||||||| |||||||| ||  | ||||||||||| || ||||| ||| | ||| ||||||| || || ||||||||||  ||||||||||||| | ||||| |  | ||||||   || ||   | |  ||||  |   | |||||      |  ||     ||| | |  | ||                    
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcata--ttggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164164524|gb|ES069658.1|ES069658
EST:     TAAACAGATCCTTGATCATTGGCCAGACCAG                         GGGGAAGTATCCTTTTGGTGATTACATTGCTTACTCAAATGCTACGTTTAC
genomic: TAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattg ... gtatcctcagGGGGAAGTATCCTTTTGGTGATTACATTGCTTACTCAAATGCTACGTTTAC