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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGgtctgcatttgcctcagccactactgtttggttacatttgatctcgtcacgtgaaacgtattgtcttactttgtgtattatcag

Basic information

species Arabidopsis thaliana
transcript AT3G26670.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 3
ATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGgtctgc---atttgcctcagccactactgtttggttacatttg------atctcgtcacgtgaaacgtattgtcttactttgtgtattatcag-------
 | |   ||||| |||||| |  | ||||||||||||||| | ||||| ||| |||| || || ||||| || || ||||||||||| || ||||||||||| |||   |||    |       |     ||||   | ||||      |  |  | |  |  |   |  | |||   ||| |||| | |          
TTCATTCATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaattcttttttctggttggaagttggaaccgtttgtgaagtacatttttatatatatgtttctctctctttttttgtaatgtggttcaaaaa

upper sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 2
ATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGgtctgcatttgcctcagccactactgtttggttacatttg---atctcgtcacgtgaaacgtattgtcttactttgtgtattatcag----------------
 | |  |||||| |||||| |  | ||||||||||||||| | ||||| ||| |||| || || ||||| || || ||||||||| | || ||||||||||| ||        ||      | ||| ||||    |||||   |   | |      | |  | ||    |  ||| ||| || |                   
TTCATTAATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAACTAGGGCATAATGAGgtatg-gccaaattc--ttttttctggttggaactatttgtaaagtacatttttgtatatatgtttctctcttttttgtgttgtggtacagaaattggctttg