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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctctgttctcctccaacattatttgtagcttacgtgttcttccttatgatgatcatcaactatatgaaatgtttgtacctatatgcatgtctatcgataaatcggatgaattatgtttgcttctgtttctcgccggttttgtaaactatttggatggttgttctgtttgtgtatcag

Basic information

species Arabidopsis thaliana
transcript AT3G26650.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035582|gb|BP858469.2|BP858469
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|152035878|gb|BP863555.2|BP863555
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124713760|gb|EH805162.1|EH805162
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGGCTTCTGCA                         ATGGGAAGCAGTG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTG
EST: gi|125239744|gb|EL253829.1|EL253829
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAA
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAA
EST: gi|124714025|gb|EH805427.1|EH805427
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGT
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGT
EST: gi|125031957|gb|EL104226.1|EL104226
EST:     CCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: CCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125028712|gb|EL100981.1|EL100981
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCA
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCA
EST: gi|124920106|gb|EH993844.1|EH993844
EST:     CTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: CTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|152035644|gb|BP859652.2|BP859652
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124751813|gb|EH841943.1|EH841943
EST:     AGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125121325|gb|EL168565.1|EL168565
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAA
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAA
EST: gi|125109602|gb|EL161975.1|EL161975
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTG
EST: gi|152034968|gb|BP841088.2|BP841088
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125245989|gb|EL260074.1|EL260074
EST:     TTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAG
genomic: TTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAG
EST: gi|124739284|gb|EH830446.1|EH830446
EST:     AGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTATGACTGAGGCCAAGCTTAAG
genomic: AGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124837171|gb|EH921610.1|EH921610
EST:     CTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: CTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124711932|gb|EH803334.1|EH803334
EST:     AGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124747887|gb|EH838017.1|EH838017
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGAC
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGAC
EST: gi|47829324|gb|CK119008.1|CK119008
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125268813|gb|EL282898.1|EL282898
EST:     AACTTTCTTCCGATGAGTTCGTT-CCATCGTCTCCT-CCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTG
EST: gi|125217758|gb|EL231841.1|EL231841
EST:     AGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|116448000|gb|EG490592.1|EG490592
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125271814|gb|EL285899.1|EL285899
EST:     TCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: TCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124718657|gb|EH810059.1|EH810059
EST:     CTTTCTTCCGATGAGTTCGTTTCCATCGTCTACCTTACCAGACTTCTGCA                         ATGGGAAGCAGT
genomic: CTTTCTTCCGATGAGTTCGTTTCCATCGTCT-CCTT-CCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGT
EST: gi|125242335|gb|EL256420.1|EL256420
EST:     TCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGACTTAA
genomic: TCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAG-CTTAA
EST: gi|125054631|gb|EL125218.1|EL125218
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACGAAGGAAAGGTG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATAC-A-GGAAAGGTG
EST: gi|125270741|gb|EL284826.1|EL284826
EST:     GAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: GAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|125217463|gb|EL231546.1|EL231546
EST:     ACTTTCTTCCGATGAGGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTG
genomic: ACTTTCTTCCGATGAG-TTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTG
EST: gi|164196580|gb|ES107728.1|ES107728
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAG
EST: gi|124845560|gb|EH929997.1|EH929997
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGA
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGA
EST: gi|124762402|gb|EH852532.1|EH852532
EST:     AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCCGCA                         ATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAA
genomic: AACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAA
EST: gi|124873477|gb|EH955122.1|EH955122
EST:     ACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGACA                         ATGGGAAGCAGTGGTGGATACAGG
genomic: ACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTG-CAgtgagttctc ... tgtgtatcagATGGGAAGCAGTGGTGGATACAGG