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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAATTCGTACGATTCCTTTTGTTGGACTATCTCTGAAGCTGAGTTCTTGCAGAGTGCTGAAATTGTTTCTAAGCGTCTTCTTCCTCATGGTTATCAGgtaattgtgagtttctttatcctttagaatgtaaaagtttaggtttttaattgcttgtgtttgtgtgtgttgatttggatacag

Basic information

species Arabidopsis thaliana
transcript AT3G26380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 3
ATGGAATTCGTACGATTCCTTTTGTTGGACTATCTCTGAAGCTGAGTTCTTGCAGAGTGCTGAAATTGTTTCTAAGCGTCTTCTTCCTCATGGTTATCAGgta-----attgtgagtttctttatcctttagaatgtaaaagtttaggtttttaattgcttgtgtttgtgtgtgttgatttggatacag------------
 |||||||| || ||||||||||| ||||| || |||||||  || ||||| || ||||||||||| |||||| | |||||     ||||||| |||||||||     | ||  |    |  || | | | ||   |  || | |  |||   | |   |||  |   | |    ||||||   | ||             
TTGGAATTCCTATGATTCCTTTTGCTGGACGATTTCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATCAGgtatagatactgcaaagaacaataacttatggatgatttaactgt--gttagcagtgctttggttagatatagactgatttctttccatcaactcttgtag

upper sequence: AT3G26380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G37760.2 (Glycine max), 5'ss of exon 2
ATGGAATTCGTACGATTCCTTTTGTTGGACTATCTCTGAAGCTGAGTTCTTGCAGAGTGCTGAAATTGTTTCTAAGCGTCTTCTTCCTCATGGTTATCAGgtaa---ttgtgagtttctttatcctttaga--atgtaaaagtt--taggtttttaattgcttgtgtttgtgt--gtgttgatttggatacag----
 ||||| || || ||||||||||| ||||| || |||||||  || ||||| |||||||||||||| |||||| | ||||| | |  |||||| ||  |||||    || ||||   |  || |   | ||  |  |  |||||  |||   ||| |||   | |     ||      ||  ||   |  |      
TTGGAACTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAATAGTTTCTCAACGTCTCCATGATCATGGATACGAGgtatagtttctgaggaaccatagctaatggatgagtttgaagttagtagtactttcattagatatagacatgataaccttccttcaaacccttgtag