Sequence
atgc intronic sequence ATGC exonic sequenceAGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgtattgaacactgagcgtttatttactctacagcatatatatttgtcgaatttcatcttacgtttttttcatatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G25800.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 3
AGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgta-ttgaacactgagcgtttatttactctacagcatatatatttgtcgaatttcatcttacgtttttttcatatcag-----------------------------------------------------------------
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AGGTCGGCTGCATCAAATCTTGGGAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATGTCATGTCAATTTTTGACGATCTTACTCAAGATGgtaattgaatacatatttcttgttctttgtagatggaaagtgtctgtcatttgtc-tgttacatattta-catgtgtgattgtgttgtagagtctcctgaatgtactttactcctttaatatgcaattgtaatcttggaacag
upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 3
AGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgta-ttgaacactgagcgtttatttactctacagcatatatatttgtcgaatttcatcttacgtttttttcatatcag-----------------------------------------------------------------------
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AGGTCGGCTGCATCAAATCTTGGGAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATCTCATGTCAATTTTTGATGATCTTACTCAAGATGgtaattgaatacatatttcttgttctttgtagatggaaagtgtctgtc-atttttgtctattgcatattt-acattggttgtgtgattgtgttgtagaatctcctgaatgtactttcctcttttaatatgtgttgtaatcttggaacag
upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 3
AGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgta-ttgaacactgagcgtttatttactctacagcatatatatttgtcga------atttcatcttacgtttttttcatatcag---------------------------------------
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AGATCTGCTGCTTCAAATCTTGGGAAGTATGCTGCTACTGTTGAATATGCCCATTTGAAGGCAGACACTATGTCAATTTTTGAGGATCTTACTAAGGATGgtaattgaatacatatttctcattctttct-tgatgtcttggcctgtcaatcataaattcaataataaattttccttaatacaattggcctagtatgcaatttaactttttaacctggctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86040357|gb|DR336112.1|DR336112EST: GCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATG ATCAAGATTCTGTTAGATTATTGGCCGTTGAGGGTTGTGCTGCTCTTGGGA
genomic: GCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgtattgaaca ... ttcatatcagATCAAGATTCTGTTAGATTATTGGCCGTTGAGGGTTGTGCTGCTCTTGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGgtattgaacactgagcgtttatttactctacagcatatatatttgtcgaatttcatcttacgtttttttcatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG