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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAGAGGATGTTCAAGTGTATGTGAAGTATTTTGATATCACGTTGTTTCCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaattaatctcttgttctagtagctgattaaagccggtttaggttggtttatgttaattccggtttggttatattgtag

Basic information

species Arabidopsis thaliana
transcript AT3G24730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24730.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g05620.t01 (Vitis vinifera), 5'ss of exon 3
ATTCAGAGGATGTTCAAGTGTATGTGAAGTATTTTGATATCACGTTGTTTCCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgta--------attaattaatctcttgttctagtagctgattaaagccggtttaggttggtttatgtt----aattccggtttggttatattgtag----
||||||||||| ||||||| ||||| ||||| ||||| || || ||| | || || ||| |||| ||||||||||| ||||| |||||  |||||||||||||         || |  |   | ||  | | ||   |  ||||    | |||   | |    |  ||    || |  |||    |||| |         
ATTCAGAGGATATTCAAGTTTATGTCAAGTACTTTGACATAACTTTGATACCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtcttgttgaaaatattatttctttggtttttttttaatcatgttttcactggagaaacattctggaactatggtaaccttatttcaacaaggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025275|gb|DR321028.1|DR321028
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025278|gb|DR321031.1|DR321031
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025276|gb|DR321029.1|DR321029
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86076496|gb|DR372253.1|DR372253
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025279|gb|DR321032.1|DR321032
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025282|gb|DR321035.1|DR321035
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025281|gb|DR321034.1|DR321034
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
EST: gi|86025274|gb|DR321027.1|DR321027
EST:     CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGG                         AACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT
genomic: CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGgtaattaatt ... tatattgtagAACTGCGGATCATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTT