Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTGAAGATGAACTTCATCACTCAGGCTGGAACTCATGTAGCTCTTGCTATGGTGATTCTTCTTGCGAGAGACGTTATCTCATCTTGCCTTCTCTTCTgtaagaaacttgttatctctcctttgttttgttctgaaaacttctcatgtattaaggtctgttttcgtgaacttatgtttgaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G23800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23800.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM5G837351_T01 (Zea mays), 5'ss of exon 2
ACCTTGAAGATGAACTTCATCACTCAGGCTGGAACTCATGTAGCTCTTGCTATGGTGATTCTTCTTGCGAG-AGACGTTATCTCATCTTGCCTTCTCTTCTgtaagaaacttgttatctctcctttgttttgttctgaaaacttctcatgtattaaggtctgttttcgtgaacttatgtttgaaaag
 |  || | || |||    |   | |   || |||  ||| |  |    |   |    | || | | |    ||  | |       ||  |  || |     |  |  |   | |   || |  | | |       |   |  |||     ||   | ||  |   |      |             
GCACTGGA-ATTAACAAGCTGGATTACCTTGCAACG-ATGGA-TTTGGACCCCGACTCTCCTACATACTCCCAGgtgatccacaggctctcagtcacccacatcggcgatgagctgcatcactctggctggaactcgtgcagctcttgc-catggtgatccatcagcaaagcatc------------