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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAGgtaaagttttctcctttggcttgttttgtgatctctatattgtttataatttgaggtaaatctttatattag

Basic information

species Arabidopsis thaliana
transcript AT3G23700.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124966671|gb|EL040760.1|EL040760
EST:     TTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAG                         GTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTTATCTGAGAAGTT
genomic: TTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAGgtaaagtttt ... tttatattagGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTT-ATCTGAGAAGTT
EST: gi|125042143|gb|EL114412.1|EL114412
EST:     GTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAG                         GTTGTTCAAGCTGATGAGGAAA-TAGAAAGTTGATTTTATCTGAGAAGTTA
genomic: GTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGTAAAGgtaaagtttt ... tttatattagGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTATCTGAGAAGTTA