1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttctatgttctttaagtatgtaaagtttgagttgtgatcgttgctttaaagggtcattgttagtagcatacttgtgtgattcattttgttcata...
species | Arabidopsis thaliana |
transcript | AT3G23490.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAEST: gi|86077490|gb|DR373247.1|DR373247
genomic: TTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAA
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGAEST: gi|116453344|gb|EG495936.1|EG495936
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGA
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGAEST: gi|124824752|gb|EH909618.1|EH909618
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGA
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTCTATTGCTCTGTCGAACAAAATEST: gi|124726811|gb|EH818213.1|EH818213
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGA-CAAAAT
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATTGATTTCTATTGCTCTGTCGACAAAATCAAAGGEST: gi|125291247|gb|EL305332.1|EL305332
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGG
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGEST: gi|116453343|gb|EG495935.1|EG495935
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGG
EST: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCAT CATGTCGGCGATAGATTTTTATTGCTCTGTCGACAAAATCAAAGGAGTGGA
genomic: TTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttct ... gtttgtttagCATGTCGGCGATAGATTTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATgtaagtttctatgttctttaagtatgtaaagtttgagttgtgatcgttgctttaaagggtcattgttagtagcatacttgtgtgattcattttgttcata
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG