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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgtgtttactgagtcatttgaggttcagagaattatgttttctggttggtttactgatttttggggttttatgtggtttttgatgtgatag

Basic information

species Arabidopsis thaliana
transcript AT3G22330.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G45030.1 (Glycine max), 5'ss of exon 2
GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgtgtttactgagtcatttgaggttcagaga--attatgttttctggttggt-ttactgatttttggggttttatgtggtttttgatgtgatag----------------------------------------------------------------------------------------------
|||| |||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| || ||  ||||  | |  || ||||| |||||||| ||  |   |   |  |||   |||  || |   | ||| ||  |  | | | |||||    ||||    ||  |    |   |||  |||  |                                                                                              
GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGGTCATTCAGTTTAATGCTAAGCATGGgttagttctatttttcttttttcttgttttgatatcgtgatgcttatttttcgctattacttgaatttgtaacttgtttctctgcgtgagttgaaggtggactaggtaattgatgttggtgtggatggaatcatggaaaaaattgatttgtttttttaactgtacaagtttttttgtggttgatgtggcag

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 2
GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgtgtttactgagtcattt---gaggttcagagaattatgttttctggttggttta--ctgatttttggggttttatgtg-gtttttgatgtgatag-------------------------------------------------------------------------------------
|||| |||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| || || |||||  | |  || ||||| |||||||| || | || |   |  |||   ||  |   ||   ||||||||     |   || |   ||    |||    | |  ||| |||   | ||   |||                                                                                     
GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagt-tctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtggcag

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G41510.1 (Glycine max), 5'ss of exon 3
GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgt---ttgtgtttactgagtcatttgaggttcagagaattatgttttctggttggtttactgatttttggggttttatgtggtttttgatgt-gatag----------------------------------------
| || |||||||||||||| ||||| || ||||| || || || |||||||||||||| || ||| | ||||  |||||  | |  || ||||| |||||||   || | |||  | |  || ||     | |    | | |||   || |||  | | ||     | ||  |||   || || | |  | | |||                                          
GACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGgtactttatatttggtta--cacttacatcttacttgaatctgtagccttgtttttctgcttgaagtaggattttctggtagtatatagtcttgatttgtgtctttaactaaacaaatttttgtggttgattattcag

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgt--gtttactg-agtcatttgaggttcagagaattatgttttctggttggtttactgatttttggggttttatgtggtttttgatgtgatag---------------------------------------------------------------
| || || ||||| ||||||||||| || || || || || || ||||||||||||||||| ||||| || ||| | ||  ||||||| ||||| |||||||||||  |||||||  ||| |     | | ||  |  | |  ||||    ||  |||    |  ||     | |  | || | |   |||  | ||                                                               
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406394|gb|EG448986.1|EG448986
EST:     TTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGG                         ACGAGGGAGGAATCCGCTTTGTTTGGTTTTGGCACCGACAAGAGAGCTATG
genomic: TTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgtgttt ... gatgtgatagACGAGGGAGGAATCCGCTTTGTTTGGTTTTGGCACCGACAAGAGAGCT-TG