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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGgtttgtgtttactgttatatataacgatcatttgtgattgagagatttgcacttcctttggttcttatgttgtcttttgatgtgacag

Basic information

species Arabidopsis thaliana
transcript AT3G22310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G45030.1 (Glycine max), 5'ss of exon 2
GTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGgtttgtgt--ttactgttatatataacgatcat-ttgtgattgagagattt-gcacttcctttggttcttatgttgtcttttgatgtgacag---------------------------------------------------------------------------------------------------
|||||||||||||||| || || || |||||||| || ||||| |||||||||||||| || || || || ||  ||||  | || || ||||| |||||||| ||    ||  | || | | |     | || | |||||    |  ||| ||  || |||   ||  ||  |||| | |    ||||                                                                                                      
GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGGTCATTCAGTTTAATGCTAAGCATGGgttagttctatttttcttttttcttgttttgatatcgtgatgcttatttttcgctattacttgaatttgtaacttgtttctctgcgtgagttgaaggtggactaggtaattgatgttggtgtggatggaatcatggaaaaaattgatttgtttttttaactgtacaagtttttttgtggttgatgtggcag

upper sequence: AT3G22310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 2
GTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGgtttgtgtttactgttatatataacgatcatttgtgattgagagatttgcacttcctttggttcttatgttgtcttttgatgtgacag--------------------------------------------------------------------------------------------------
|||||||||||||||| || || || |||||||| || ||||| |||||||||||||| || || || || || |||||  | || || ||||| |||||||| || | || | || | | ||| |||    ||    | |  | || ||  |  |||   ||  ||  |||| | |    ||||                                                                                                     
GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagt-tctattcttttttttaatgatatcgtgatgcttat-gtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124805160|gb|EH892617.1|EH892617
EST:     TTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGG                         TCGTGGGAAGAATCCTCAGTGCT
genomic: TTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGgtttgtgttt ... gatgtgacagTCGTGGGAAGAATCCTCAGTGCT