Sequence
atgc intronic sequence ATGC exonic sequenceACGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G19290.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G19290.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G14880.1 (Glycine max), 5'ss of exon 1
ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacag
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--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgttagccatcttacaattagtcat-tttaatgcacc--agttagttccactgttttattaacataaaaagtattaacacatgtgacattg-taaacaactttct-----------------------------------------------------------------------------------
upper sequence: AT3G19290.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G33600.2 (Glycine max), 5'ss of exon 2
ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacag
| | | ||| ||| | ||||||| || | |||||||| |||||||||||||| || ||| | ||||||||||| || ||||| ||||| |||||||| | | | || ||| | || | | | | | ||| ||| || | | | || | | | |||| ||| | | | | || | | | |
--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcaccctacaattaa--tcattaaatgcatcat---cagttccactgtttt---ttaacat------aaaaagtgttaac---aaatgtgacattggaaacaacttactatg----------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164019603|gb|ES114997.1|ES114997EST: CGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAG GCTTATACATTGGAACTGGAAGCCGAAATTGAAAAGCTCAAGAAAACGAAT
genomic: CGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataa ... ctaattacagGCTTATACATTGGAACTGGAAGCCGAAATTGAAAAGCTCAAGAAAACGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT