1 5' 3' | 2 5' 3' |
ATCATAAAGAAAGCACGCATTTATTCTCCACAAGCTGCTGCTGCGGCTCTCAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGgtgatttagttattgctctctaattttttgtatcagaatattttgtttcagtgtattgtcctttgatacctttagtggaactgcatgagaattgaacttt...
species | Arabidopsis thaliana |
transcript | AT3G18880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAG TTTTGCAGTTCTGGCGCAAACTCACCCCAGGGTCGAACAATGTGGGTCGCAEST: gi|19878428|gb|AU239259.1|AU239259
genomic: CAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGgtgatttagt ... cttgctgcagTTTTGCAGTTCTGGCGCAAACTCACCCCAGGGTCGAACAATGTGGGTCGCA
EST: CAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAG TTTTGCAGTTCTGGCGCAAACTCACCCCAGGGTCGAACAATGTGGGTCGCA
genomic: CAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGgtgatttagt ... cttgctgcagTTTTGCAGTTCTGGCGCAAACTCACCCCAGGGTCGAACAATGTGGGTCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATAAAGAAAGCACGCATTTATTCTCCACAAGCTGCTGCTGCGGCTCTCAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGgtgatttagttattgctctctaattttttgtatcagaatattttgtttcagtgtattgtcctttgatacctttagtggaactgcatgagaattgaacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctctct