1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGATTGGTCCAATACTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtctttattttagttcatcgtgttgctttggtcgatataactatatgaatataataataaacatagttcatgattgattattttgatag
species | Arabidopsis thaliana |
transcript | AT3G15840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGEST: gi|47828825|gb|CK118509.1|CK118509
genomic: AGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGG
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|47828827|gb|CK118511.1|CK118511
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|125159446|gb|EL187529.1|EL187529
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CTGTTGCCACGACTCTTGCACCTCTCGAGGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|47828708|gb|CK118392.1|CK118392
genomic: CTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|116441102|gb|EG483694.1|EG483694
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|124732869|gb|EH824271.1|EH824271
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCEST: gi|47831953|gb|CK121637.1|CK121637
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTC
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|47830759|gb|CK120443.1|CK120443
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|47832287|gb|CK121971.1|CK121971
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTAEST: gi|116479684|gb|EG522276.1|EG522276
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
EST: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGA ATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
genomic: CAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtcttt ... attttgatagATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGATTGGTCCAATACTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTTGCACCTCTCGAAGAGATCAAAGAgtctgtctttattttagttcatcgtgttgctttggtcgatataactatatgaatataataataaacatagttcatgattgattattttgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA