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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatattgtcttatacttcatgttcttaggttgagcattgttagtctctgtcatcttttactacatggaactaatggggaatttgtcttttatggtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15354.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 4
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatatt-gtcttatacttcatgttcttag---gttgagcatt--gttagtctctgtcatcttttact-acatggaactaatggggaatttgtcttttatggtgcag
|  | |||||||| || ||| || | || || || || ||||||||||| || ||||| ||||||||||||||||| || |   |||| ||| || |  |||    || ||  ||  ||  ||  |  | || |    ||    ||     | || | || ||| |   | | || ||  |    ||      | || || |         
ACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGACCCTAAGAGTCGTCCAACACTTGGgtaattatcttcatcacatggtttttactttttgcttattacatatccaaattgtttgtgacatgtcccatttacctgccatc--tgaatgcctggttttct---------

upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G35190.1 (Glycine max), 5'ss of exon 7
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatatt-gtcttatacttcatgttcttaggttgagcattgttagtctctgtcatcttttactacatggaactaatggggaatt----tgtcttttatggtgcag
|  | |||||||| || ||| || | || || || || |||||||||||||| || || ||||||||||||||||| || | | |||| ||| || |  |||    || ||  ||  ||  ||  |  | ||    ||   ||| |   ||    |  | | | || | ||   | | |   |  |||    || ||||| |  |    
ACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCTTTTTGTTTATGGTTACTGCATCCTGACCCTAGTGGTCGTCCAACACTCGGgtaattatcttcatcacatggtttttagtttt----tgcatattatatatccaaattgtttatgac-atatcccatttacctgccatttgaatgccttttttttt----

upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G25240.1 (Glycine max), 5'ss of exon 4
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatattgtcttatacttcatgttcttaggttgagcattgttagtctctgtcatctttt--actacatggaactaatggggaatttgtcttttatggtgcag
|| | |||||||| || ||| || |  | ||||| || ||||||||||| || |||||||||||| | ||||||||||| | | |||| ||| ||||  |||  |  |  |   | | |   | | | | ||  |  |  ||    | | | ||  |   |||  | ||| ||  |||  |  | | | | |  ||| |       
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattttcttcatcacatgccttttacata--tcaaatatccaaattgtttgcaaatgtttgaattacctgccacttgtatgcattgttttctttttccc----

upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 4
ATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTTTCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGgtttacatattgtcttatacttcatgttcttaggttgagcattgttagtctctgtcatcttttactacatggaactaatggggaatttgtcttttatggtgcag
|| | |||||||| || ||| || |  | || || || ||||||||||| || |||||||||||| | ||||||||||| | | |||| ||| ||||  |||  |     |   | | |   | | | | || |           |  | |        |   | ||| |   |||  |  | | | | |  ||| |  |    
ATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGgtaaattctcttcatcacatgccctttacatatgaaatatccaaattattttcacatgttccaattaccttccacttgtatgcattgttttctttttcct----