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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCCATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGgtaatcttgcaattaatgttctttctgtttttgttcacaagtaaagactgcctaacttttggtcccttctctgttctctatttatttctccatgaag

Basic information

species Arabidopsis thaliana
transcript AT3G14410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G40160.1 (Glycine max), 5'ss of exon 2
GTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCCATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGgta--atcttgcaattaatgttctttctgtttttgttcacaagtaaagactgcctaacttttggtcccttctctgttctctatttatttctccatgaag
||| |||||||||||||| |||||||||||| | || |||||| |||| || ||| |||| ||||||||  |||| ||| |  | |||||  |||| ||||||     |||   ||  |||  ||| |  |||  |     ||| |         || |   |||   |  ||||||   ||                 
GTCCTCTAAGGAAATTAACTTCCCTTATCCTTTGGGCTTGACTCTACTTCACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggtttgagcttggtgtattttgttatttaatc----agttactgtcatgcaa-tgcaggttaatgatctgtttcttacag--------------

upper sequence: AT3G14410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G18730.1 (Glycine max), 5'ss of exon 3
GTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCCATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGgta--atcttgcaattaatgttctttctgtttttgttcacaagtaaagactgcctaacttttggtcccttctctgttctctatttatttctccatgaag
||| |||||||||||||| |||||||||||| | || |||||| |||| || ||| |||| ||||||||  |||| ||| |  | |||||  |||| ||||||     |||   ||  |||  |    || ||  || |  ||| |    |    || |   |||   |  ||||||   ||                 
GTCTTCTAAGGAAATTAACTTCCCTTATCCTTTGGGGTTGACTCTACTTCACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGgtacgggtttgagcttggtgtatt----gtgttgtttaatcagttactgttatgcaa-tgcaggttaatgatctgtttcttacag--------------