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TTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAGgtttctctttctctatttttcatttttttctgtggtttgactaccatttttgatcttgtaaaactgagtttatgcattcgttcttatgtgttttgctctg...
species | Arabidopsis thaliana |
transcript | AT3G13930.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAG TTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTEST: gi|152038127|gb|BP808947.2|BP808947
genomic: CTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAGgtttctcttt ... atctgaccagTTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGT
EST: GCTCCGATGGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAG TTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTGGCAGTCCGCEST: gi|152037856|gb|BP800329.2|BP800329
genomic: GCTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAGgtttctcttt ... atctgaccagTTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTGGCAGTCCGC
EST: GCTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAG TTGAAACATGTTTCCGCTTTACTGCGGGGTGACCATGCTGTGGCAGTCCGC
genomic: GCTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAGgtttctcttt ... atctgaccagTTGAAACATGTTTCCGCTTTACTGCGGCGTGACCATGCTGTGGCAGTCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCTCGTATCATCAATCATTCCAAAAAGgtttctctttctctatttttcatttttttctgtggtttgactaccatttttgatcttgtaaaactgagtttatgcattcgttcttatgtgttttgctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactga