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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttacttctgttttttcattcttgagtgtgttctctccgcatgctctagctgctaattgtactgtattgatacag

Basic information

species Arabidopsis thaliana
transcript AT3G13920.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86034984|gb|DR330737.1|DR330737
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034973|gb|DR330726.1|DR330726
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116436248|gb|EG478840.1|EG478840
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035139|gb|DR330892.1|DR330892
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034992|gb|DR330745.1|DR330745
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT---A                         -CTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034913|gb|DR330666.1|DR330666
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035064|gb|DR330817.1|DR330817
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034985|gb|DR330738.1|DR330738
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035170|gb|DR330923.1|DR330923
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034997|gb|DR330750.1|DR330750
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035066|gb|DR330819.1|DR330819
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034888|gb|DR330641.1|DR330641
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034967|gb|DR330720.1|DR330720
EST:     GCACACAGTTTGATGCACGTCAGTTTAACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|47829698|gb|CK119382.1|CK119382
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035051|gb|DR330804.1|DR330804
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035092|gb|DR330845.1|DR330845
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034884|gb|DR330637.1|DR330637
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034857|gb|DR330610.1|DR330610
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116420410|gb|EG463002.1|EG463002
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035131|gb|DR330884.1|DR330884
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATTTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035037|gb|DR330790.1|DR330790
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116403403|gb|EG445995.1|EG445995
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034886|gb|DR330639.1|DR330639
EST:     GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAA--GT--                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGAgtctttttac ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG