Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtctttttacttctgttttttcattcttgagtgtgttctctccgcatgctctagctgctaattgtactgtattgatacag

Basic information

species Arabidopsis thaliana
transcript AT3G13920.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86034973|gb|DR330726.1|DR330726
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034937|gb|DR330690.1|DR330690
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035064|gb|DR330817.1|DR330817
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035170|gb|DR330923.1|DR330923
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035160|gb|DR330913.1|DR330913
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCSTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035037|gb|DR330790.1|DR330790
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|47829698|gb|CK119382.1|CK119382
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034857|gb|DR330610.1|DR330610
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116403403|gb|EG445995.1|EG445995
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034967|gb|DR330720.1|DR330720
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTAACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035092|gb|DR330845.1|DR330845
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034880|gb|DR330633.1|DR330633
EST:     AAGGCACACAGTTTGNATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCCTATGATGATGTTCATGAGA
genomic: AAGGCACACAGTTTG-ATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACAT-CCTATGATGATGTTCATGAGA
EST: gi|86035139|gb|DR330892.1|DR330892
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116436248|gb|EG478840.1|EG478840
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034992|gb|DR330745.1|DR330745
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035125|gb|DR330878.1|DR330878
EST:     GAAGGCACACAGTTTGATGCACGTCAGTATGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86035051|gb|DR330804.1|DR330804
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034997|gb|DR330750.1|DR330750
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|116420410|gb|EG463002.1|EG463002
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034913|gb|DR330666.1|DR330666
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034888|gb|DR330641.1|DR330641
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034886|gb|DR330639.1|DR330639
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
EST: gi|86034984|gb|DR330737.1|DR330737
EST:     GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT                         ACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG
genomic: GAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTgtgagtcttt ... attgatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAG