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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTgtaagcattaccccaattcttctacttacacctcttcaccatgagatgttgacttttctgaaacaaaaaaatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G13772.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13772.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G01240.1 (Glycine max), 5'ss of exon 2
CTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTgtaagcattaccccaattcttctacttacacctcttcaccatgagatgttgacttttctgaaacaaaaaaatttcag---------------------------------------------------
||||| | |||| || || || ||    ||||| |||||||| || || ||||| || |||||||| |||||||| |||||||||||||| || ||||| || |||||        ||| ||   | |||  |    |  ||||  || |||  |||    | ||      | |                                                      
CTACTTCTTGAAGTATTGCAAACCCAAAAAGATATTGAACAACGCCGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGCATTGAGAATTCAGTATATACAgtgagcatc-tgttgcttcatcctttgacatttggataagatga--tgatgaaatttggtgatcattgctttcttgtttagttgtgtcaacttaaaggtttttttttcttttccttttctctttccag

upper sequence: AT3G13772.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G20640.1 (Glycine max), 5'ss of exon 2
CTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTgtaagca----ttaccccaattcttc-tacttacacctcttcaccatgagat-----gttgacttttctgaaacaaaaaaatttcag------------------------------------
||||| | |||| || || || ||    | ||| ||||||||||| || ||||| || |||||||| |||||||| || ||||||||||| || ||||| || ||||    || || ||    ||   | ||  |     | |  |||| ||     | | | | || |       |    | |||                                     
CTACTTCTTGAAGTATTGCAAACCCAAAACGATATTGAACAATGCAGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGTATTGAGAATTCAGTATATACAgtgagcatctgttgcctcatcctttgacatttggataagatgatgatgaaattcagtgataattgttttcttgtttagttgtgtcaactcaaagtttttttttttttccttttctttttccag

upper sequence: AT3G13772.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv09s0002g02140.t01 (Vitis vinifera), 5'ss of exon 2
CTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTgtaagcattaccccaattcttctacttacacctcttcaccatgagatgttgacttttctgaaacaaaaaaatttcag-----------------------------
||| ||| |||| |  ||||||||    |||||| |||||| ||| || |||||||| ||||||||| ||||||| ||||||||||||||| |||||||||| ||  ||  |   |         | | |     ||   || |||||||  | ||| | |    |   |||||  |                             
CTATTACTTGAAGTGGTGTAAGCCCAAGAAGATCATGAACAGTGCAGAAAATTTAGGAGAGGTTCTCCGAGGTGATCGCATTGAGAATTCCATTTATACTgtgagtgttttctagaaaaagaagataaaaaaaggtctttattagatgttaccattttttatgttactgaatttatgcatatctaagtctatgaattttttcccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125009112|gb|EL081381.1|EL081381
EST:     ATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACT                         TTTCAAATGCTGGAAGATCAGCCCTGCAAAGTAGGTTGCC
genomic: ATTTAGGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTgtaagcatta ... aaaatttcagTTTCAAATGCTGGAAGATCAGCCCTGCAAAGTAGGTTGCC