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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGGACAAGAAACTCCAAAgtaagctcgatctcttcttccactttttcaattttaaagcgtctttaagtcgaacctaaatctcttactcagatgagaattgcttgcaacccgatttctc...

Basic information

species Arabidopsis thaliana
transcript AT3G11500.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125241957|gb|EL256042.1|EL256042
EST:     AAGTACATGGACAAGAAACTCCAAA                         TTAAGCTTAATGCCAACA
genomic: AAGTACATGGACAAGAAACTCCAAAgtaagctcga ... cccaatgtagTTAAGCTTAATGCCAACA
EST: gi|164233531|gb|ES101545.1|ES101545
EST:     CAAGAAGTACATGGACAAGAAACTCCAAA                         TTAAGCTCAATGCCAACAGAATGGTTGTTGGAACACTCCGTGGCTTTGATC
genomic: CAAGAAGTACATGGACAAGAAACTCCAAAgtaagctcga ... cccaatgtagTTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGATC
EST: gi|152038476|gb|AV823925.2|AV823925
EST:     AAGTACATGGACAAGAAACTCCAAA                         TTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGATC
genomic: AAGTACATGGACAAGAAACTCCAAAgtaagctcga ... cccaatgtagTTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGATC
EST: gi|124846160|gb|EH930597.1|EH930597
EST:     CATGGACAAGAAACTCCAAA                         TTAAGCTTAAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGAT
genomic: CATGGACAAGAAACTCCAAAgtaagctcga ... cccaatgtagTTAAGCTT-AATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACATGGACAAGAAACTCCAAAgtaagctcgatctcttcttccactttttcaattttaaagcgtctttaagtcgaacctaaatctcttactcagatgagaattgcttgcaacccgatttctc

-  CATGGA
- - - - - AAGAAA
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