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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttgctttcagaccattcttctctaaaaccacttgcagaatctcatcttcttcatgtaaaaatatgactttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G11170.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125048293|gb|EL120562.1|EL120562
EST:     CATTCCTCAATTCTGGTCCCATACCATGGCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
genomic: CATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
EST: gi|124909590|gb|EH983670.1|EH983670
EST:     GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCGTACCATGGCTG                         GAGAATTAGTCA
genomic: GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCA
EST: gi|86069069|gb|DR364826.1|DR364826
EST:     GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCANNNCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
genomic: GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
EST: gi|125128054|gb|EL172585.1|EL172585
EST:     TTCCTCAATTCTGGTCCCATACCATGGCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
genomic: TTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
EST: gi|125087450|gb|EL146573.1|EL146573
EST:     TGGTCCCATACCATGGCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
genomic: TGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
EST: gi|125099847|gb|EL155506.1|EL155506
EST:     GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTG                         GAGAATTAGTCA
genomic: GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCA
EST: gi|125221335|gb|EL235420.1|EL235420
EST:     CTGGTCCCATACCATGGCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
genomic: CTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGA
EST: gi|125322310|gb|EL336395.1|EL336395
EST:     GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTG                         GAGAATTAGTCACAGAACTCACCACCAGAACCATGGACAT
genomic: GTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGgtgagttttg ... gactttgcagGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACAT