Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgtgttttgagtttctgtgtatttcttcgattttgttgttctgtaattgatggtttgttttaatgtataacag

Basic information

species Arabidopsis thaliana
transcript AT3G10920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124794662|gb|EH884341.1|EH884341
EST:     AACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
genomic: AACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
EST: gi|124807878|gb|EH894282.1|EH894282
EST:     GAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
genomic: GAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
EST: gi|125195156|gb|EL210110.1|EL210110
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGG
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGG
EST: gi|301501665|gb|HO207205.1|HO207205
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGC
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGC
EST: gi|301501762|gb|HO207302.1|HO207302
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
EST: gi|125213955|gb|EL228679.1|EL228679
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTAGAGAGCC
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCC
EST: gi|116426619|gb|EG469211.1|EG469211
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
EST: gi|47828007|gb|CK117691.1|CK117691
EST:     GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT                         GAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT
genomic: GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgt ... tgtataacagGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTgtgagcttgtgttttgagtttctgtgtatttcttcgattttgttgttctgtaattgatggtttgttttaatgtataacag

- - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - AAGAAC