1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaacctcacttctctctatgtcactggtaacttatcttatttgattcatctccgagattctctgttggttcttattactcagtgatatcgacat...
species | Arabidopsis thaliana |
transcript | AT3G10850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|86023772|gb|DR319525.1|DR319525
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|164235212|gb|ES070634.1|ES070634
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|124741549|gb|EH832711.1|EH832711
genomic: GATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: ATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|152038306|gb|BP813348.2|BP813348
genomic: ATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGT-CCTGATATCAAEST: gi|86023773|gb|DR319526.1|DR319526
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|152035101|gb|BP844575.2|BP844575
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|86027937|gb|DR323690.1|DR323690
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|124770984|gb|EH861114.1|EH861114
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: CTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|124805881|gb|EH893028.1|EH893028
genomic: CTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAEST: gi|152035013|gb|BP842123.2|BP842123
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGA
EST: GAGAAGCACCAAGCTAAGATCAAGT-CGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|86023775|gb|DR319528.1|DR319528
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTGAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|124974888|gb|EL048421.1|EL048421
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAEST: gi|86023774|gb|DR319527.1|DR319527
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|125153657|gb|EL184694.1|EL184694
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: CGTACTCACTACGCATCTTTACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAEST: gi|152034408|gb|BP827689.2|BP827689
genomic: CGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
EST: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTG GGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
genomic: GAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaac ... atgatcaaagGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGgtaagtaaacctcacttctctctatgtcactggtaacttatcttatttgattcatctccgagattctctgttggttcttattactcagtgatatcgacat
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatctcc