1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGCTCAAGAAGATCCAAAACCAGCCGTGACTTTGCAAGTAGATGCTTCTAATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAGgtttgttaatgttacggtctcaaatagatctttgcaatgtacgcaatgtgttcaaatcaatcataaactttatatgctctatgttcattatag
species | Arabidopsis thaliana |
transcript | AT3G10740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAG GAGATCAACCATGCTGGTGCCGGTGGATTATGGGTCGAACTTGTTAGCAACEST: gi|124941761|gb|EL018086.1|EL018086
genomic: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAGgtttgttaat ... ttcattatagGAGATCAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGCAAC
EST: GATTTTCTTCGAG GAGATCAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGTAACEST: gi|124815264|gb|EH900130.1|EH900130
genomic: GATTTTCTTCGAGgtttgttaat ... ttcattatagGAGATCAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGCAAC
EST: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAG GAGATCAACCATGCTGGTGCCGGTGGATTATGGGCCGEST: gi|124930720|gb|EL008143.1|EL008143
genomic: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAGgtttgttaat ... ttcattatagGAGATCAACCATGCTGGTGCCGGTGGATTATGGGCCG
EST: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAG GAGATCAACCATGCTGG
genomic: ATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAGgtttgttaat ... ttcattatagGAGATCAACCATGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAAGAAGATCCAAAACCAGCCGTGACTTTGCAAGTAGATGCTTCTAATGGAGGTGGACGACCCATTCCTGAAACGCTATTTGGGATTTTCTTCGAGgtttgttaatgttacggtctcaaatagatctttgcaatgtacgcaatgtgttcaaatcaatcataaactttatatgctctatgttcattatag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA