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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGgtaagtgaaagctgatgatttactactattatgtgatgatggacatatatatagatgttaaaaattgtttgggtttggtggtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G09770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g15000.1 (Oryza sativa), 5'ss of exon 2
---GGATGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGgtaagtg--aaagctgatgatttactactat-tatgtgatgatggacatatatatagatgttaaaaattgtttgggtttggtggtgcag-----------
   ||  || |     | || |||||| ||||||||||| |||||||||||||| ||  | || || ||| | || || || ||||| |||||| | ||||||||||||     |  ||   ||| |||| |   | ||      | |   |  ||    | |||||| |  | |      |  |  ||              
CTCGGTGGAAGGC---GATGCTGATGCCAATGATCCTGGGAAAGAATGTGTTATTTGCCTCTCGGAGCCAAGGGATACTACCGTTCTCCCATGTAGGCATATGgtaagtatccgatttgtgtattgactagttcatgtgcagcattaggggtccatgatcaagttaaataaagctacaaagttattctgtttctaaaaccata

upper sequence: AT3G09770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G05930.1 (Glycine max), 5'ss of exon 2
--GGATGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGgtaagtgaaagctgatgatttactactattatgtgatgatggacatatatatagatgttaaaaattgtttgggtttggtggtgcag---------------
     ||  || | |  ||  ||||  ||||| || || ||||| ||||||||||| ||||| || || || ||||| ||||| ||||||||||| || ||||||  | |   ||| |    |  |  | |||  | |   |      ||   | ||  | ||  ||  | ||    | ||  |  |                
TTCAGTGGAGAGTGATGTG--GATGGGAATGACCCGGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGgtatttaattactggtttcctttttttcttacattaatttcttttaattggttgac-tgaatgatgctctgatggtagtcattaatactatgagtattagt

upper sequence: AT3G09770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g01940.t01 (Vitis vinifera), 5'ss of exon 2
GGATGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGgtaagtgaa--agctgatgatttactactatta-tgtgatgatggacatatatatagatgttaaaaattgtttgg-gtttggtggtgcag----------
   || ||||   | |  |||    |||||||| || |||||||||||||| || ||||| ||||| || ||||| ||||| ||||| ||||||||||||||||||| |  | ||  |   ||  |   ||   ||| || |       |       | |   ||||| |      | || |  |  |||          
CTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGgtaagtgcattatcttgtttatttttgggatggctgtaataaaatgaggaagcgagaagggctaaaatagcccaatggttagctgcccagtattccttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080533|gb|DR376290.1|DR376290
EST:     TATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATG                         TGTATGTGTAGCGGATGTGCTAAGGTATTGAGGTTTCAGACAAATCGATGC
genomic: TATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGgtaagtgaaa ... ggtggtgcagTGTATGTGTAGCGGATGTGCTAAGGTATTGAGGTTTCAGACAAATCGATGC