1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAACAGGGCTGCTGCTGTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGGgttagcttccttacattgcttctagttatatcagtagcttggttgaggttatatgattgttttgaaggatttaactttttcagactcggtaacaatctatacattgttag
species | Arabidopsis thaliana |
transcript | AT3G09740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGG GTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAACGATTTGGTGCTCEST: gi|124868311|gb|EH952748.1|EH952748
genomic: CACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGGgttagcttcc ... acattgttagGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTC
EST: CTTGCTGTCAAGCGG GTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTCEST: gi|116435937|gb|EG478529.1|EG478529
genomic: CTTGCTGTCAAGCGGgttagcttcc ... acattgttagGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTC
EST: CACGATTGTCAGAGGAAGTTCCCAAGTTCCAAAGACTTGCTGTCAAGCGG GTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTCEST: gi|124827660|gb|EH912526.1|EH912526
genomic: CACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGGgttagcttcc ... acattgttagGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTC
EST: TCCCAAGTTGCAAAGACTTGCTGTCAAGCGG GTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTC
genomic: TCCCAAGTTGCAAAGACTTGCTGTCAAGCGGgttagcttcc ... acattgttagGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAGGGCTGCTGCTGTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGGgttagcttccttacattgcttctagttatatcagtagcttggttgaggttatatgattgttttgaaggatttaactttttcagactcggtaacaatctatacattgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG