Sequence
atgc intronic sequence ATGC exonic sequenceGTGAATGTAGCTCCTCTCCGTGCCTATTACTTTTCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATGgtaatatgatgttttacatgttactcaaggttataaaaagtggctttaaagtaacactttagatgaattctatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G08680.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G08680.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
GTGAATGTAGCTCCTCTCCGTGCCTATTACTTTTCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATGgtaatatgatgttttaca-tgttactcaaggttataaaaagtggctttaaagta-acacttta-----gatgaattctatgcag-----------------------------------
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CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164078735|gb|ES036633.1|ES036633EST: ATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATG GAAACAATGAGGGAGGAAGAGCAGCGTTGGACTGGGAAACAAGGTTAAGGA
genomic: ATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATGgtaatatgat ... ttctatgcagGAAACAATGAGGGAGGAAGAGCAGCGTTGGACTGGGAAACAAGGTTAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAATGTAGCTCCTCTCCGTGCCTATTACTTTTCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATGgtaatatgatgttttacatgttactcaaggttataaaaagtggctttaaagtaacactttagatgaattctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT