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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATAGCGATTCGGAAATGTGAGGATCAAAAGCAGCTTCGGATTGCAAATGTTAATGATAAGTACACTATGTGTACATATCCTGCCGATCCTGACCAGgtaatgtatctgtgttgcattctcctgtttgtcacagacaatatagttgagatcctggagtcctagaatactactggcttactttacttatcgtacgtgttaattttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G06580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 2
AATTATAGCGATTCGGAAATGTGAGGATCAAAAGCAGCTTCGGATTGCAAATGTTAATGATAAGTACACTATGTGTACATATCCTGCCGATCCTGACCAGgta-atgtatctgtgttgcattctcctgtttgtcacagacaatatagttgagatcctggagtcctagaatactactggcttactttacttatcgtacgtgttaattttgcag
 |||     |  |       | |||  ||  || |  ||||| ||||| ||||||| ||||||||| ||||||||||| |||||||| ||||| || ||||||  |  ||   | ||   |  |  || |||||   |||  | |  |||   |      ||  ||   || |   | ||   || ||   | |  |   |||         
GATTCGGAAGCATGACGCCGGAGAGAGTCCGAAACTTCTTCGAATTGCTAATGTTAGTGATAAGTATACTATGTGTACTTATCCTGCTGATCCCGAGCAGgtatgttgatgaattttctttaattatgcttgtctgtgactttttt-ttgttgttt----gttttatgctaattgggactcttttaacgagtagagcacattatg-------