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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGCTATGAAAGTCAAGATCTTGCGTATCCTTTTgttgcttcatctcttcttagcttttttgggggaaagtttatattaggttaagtgataaatcatcccaggacttttgatggtgatcatctgatatgataat...

Basic information

species Arabidopsis thaliana
transcript AT3G05870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv14s0060g00290.t01 (Vitis vinifera), 5'ss of exon 3
------GAGGAAGCTATGAAAGTCAAGATCTTGCGTATCCTTTTgttgcttcatctcttcttagcttttttgggggaaagtttatattaggttaa-gtgataaatcatcccaggacttttgatggtgatcatctgatatgataat
       | || |  ||||||||||||||||||||||||||||| |   |   | | |  ||     ||      |    ||  | ||   | ||  |  |||| ||||     ||| |  |                       
CAGCTCAAAGAGG--ATGAAAgtcaagatcttgcgtatcctttt-taattatgtttttgttttttgcttggatatgctccttcttcttctttcaatattttaaaccatc---aaactctcaaaac--------------------