1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattag
species | Arabidopsis thaliana |
transcript | AT3G05530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071034|gb|DR366791.1|DR366791
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTNAACAAGCAGCTGNCTTACTTGGTTGGCNACATTGNCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGEST: gi|301502331|gb|HO207871.1|HO207871
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGG
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071039|gb|DR366796.1|DR366796
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATAATEST: gi|86071062|gb|DR366819.1|DR366819
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGAAGCTGAGGAAGATGGTGCAAATATTEST: gi|86071059|gb|DR366816.1|DR366816
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071028|gb|DR366785.1|DR366785
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071063|gb|DR366820.1|DR366820
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071044|gb|DR366801.1|DR366801
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071050|gb|DR366807.1|DR366807
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071057|gb|DR366814.1|DR366814
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071046|gb|DR366803.1|DR366803
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071049|gb|DR366806.1|DR366806
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|125076450|gb|EL139599.1|EL139599
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTEST: gi|86071047|gb|DR366804.1|DR366804
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071045|gb|DR366802.1|DR366802
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071048|gb|DR366805.1|DR366805
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071065|gb|DR366822.1|DR366822
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071055|gb|DR366812.1|DR366812
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071061|gb|DR366818.1|DR366818
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071056|gb|DR366813.1|DR366813
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071040|gb|DR366797.1|DR366797
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071033|gb|DR366790.1|DR366790
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071064|gb|DR366821.1|DR366821
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: GATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTTGTCGAG ATTTTGGAGATGAATCCAGAANATGATGCTGAGGAAGATGGTGCAAATATEST: gi|124951310|gb|EL026692.1|EL026692
genomic: GATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATT-GTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATAT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATEST: gi|86071038|gb|DR366795.1|DR366795
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAAT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071036|gb|DR366793.1|DR366793
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGNTGGCAACATTGGCGAG ATTTTGGAGATGAATCCEST: gi|86071035|gb|DR366792.1|DR366792
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCC
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071053|gb|DR366810.1|DR366810
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGGAGGAAGATGGTGCAAATATEST: gi|86071054|gb|DR366811.1|DR366811
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTG-AGGAAGATGGTGCAAATAT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071029|gb|DR366786.1|DR366786
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071037|gb|DR366794.1|DR366794
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071030|gb|DR366787.1|DR366787
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTEST: gi|86071060|gb|DR366817.1|DR366817
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
EST: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAG ATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
genomic: AGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaact ... atgctattagATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGgtattcaactagttttcttatcttatttttggtattttcctacagagtcttacctatttgatttgaattctaactgttgtgttaccatatcatgctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC