Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatattgaatgtgttttacctcatcagttgtgatttaactgtgtaggtttttggttttgctaatgcggttttggtttgtgtttgccag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G04770.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G04770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
TGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatattgaatgt--gttttac--ctcatcagtt----gtgatttaactgtgtaggtttttggttttgctaatgcggttttggtttgtgtttgccag
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CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag-
upper sequence: AT3G04770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 2
TGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatat---tgaatgtgttttacctcatcagttgtgatttaactgtgtaggtttttggtt-ttgctaatgcggttt-tggtttgtgt-ttgccag--------------------------------------------------------------
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TGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAGACTTCGTTCAGTGAGCCTCGTCTCCTTATCCTCACTGATCCAAGAACAGATCACCAGgtggatacccaaatcagcttcaaatgatatatttgattttagttacttgtgctttgattgattgttgacatgatttatgttatgtatgttgtttgcggttgttgtggtgttgactgtgttgtgttgttaatgtgtgtgtttgttcgtttgtgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079746|gb|DR375503.1|DR375503EST: TCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAG CCAATCAAGGAAGGTGCTTTGGGAAACATTCCAACTATTGCCTTCTGTGAC
genomic: TCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatattgaa ... tgtttgccagCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAACTATTGCCTTCTGTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatattgaatgtgttttacctcatcagttgtgatttaactgtgtaggtttttggttttgctaatgcggttttggtttgtgtttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC