1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACGGTGCACCGTACCTACGGAAAATTGACTTGAAACTCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaaattgacaatatatctatctactaaaacatgatcctttttatcatatattgtttgaaatttgaaattttatttttcag
species | Arabidopsis thaliana |
transcript | AT3G04730.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAG GCAACTATGGACCEST: gi|125234033|gb|EL248118.1|EL248118
genomic: CCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACC
EST: CAAAATGTTTAGCTCTTTTACCATAG GCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGAEST: gi|116458903|gb|EG501495.1|EG501495
genomic: CAAAATGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
EST: CCAAGATCTTTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAG GCAACTATGGACCCCAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGAEST: gi|47829393|gb|CK119077.1|CK119077
genomic: CCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
EST: CCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAG GCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGAEST: gi|124903309|gb|EH977389.1|EH977389
genomic: CCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
EST: TGTTTAGCTCTTTTACCATAG GCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGAEST: gi|124862423|gb|EH946860.1|EH946860
genomic: TGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
EST: GATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAG GCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
genomic: GATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaa ... tatttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGGTGCACCGTACCTACGGAAAATTGACTTGAAACTCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGgtaaataaaaattgacaatatatctatctactaaaacatgatcctttttatcatatattgtttgaaatttgaaattttatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA