1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAGATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTgtgagtctctaaatccttttttccctttcatgttatatgagttgcagctagtagtcatataatgctcttgaactaaaactaaaatcctagtgataagaaa...
species | Arabidopsis thaliana |
transcript | AT3G04610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCGAATAAAGATTCTCGAT-GTCCTCCA-GCACAACAGAAAGAGCT GTTATGGTTTCTGGTAAAGAAGAGCCCGAATCATCTCTACCACCTTCTATGEST: gi|125252926|gb|EL267011.1|EL267011
genomic: GCTCGAATAAAGATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTgtgagtctct ... tttgtcgcagGTTATGGTTTCTGGTAAAGAAGAGCCCGAATCATCTCTACCACCTTCTATG
EST: CACAACAGAAAGAGCT GTTATGGTTTCTGGTAAAGAAGAGCCCGAATCATCTCTACCACCTTCTATG
genomic: CACAACAGAAAGAGCTgtgagtctct ... tttgtcgcagGTTATGGTTTCTGGTAAAGAAGAGCCCGAATCATCTCTACCACCTTCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAGATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTgtgagtctctaaatccttttttccctttcatgttatatgagttgcagctagtagtcatataatgctcttgaactaaaactaaaatcctagtgataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataagaa