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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGTATGAACGCTATGATGCAACAGACTCTGAAACTTTAAGTGAACCCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGgttagtagttcagtgtgtgtgtttttaattagagatgagaagaacccttttatgtattattacctgtggtgttactcttag

Basic information

species Arabidopsis thaliana
transcript AT3G03610.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038994|gb|DR334749.1|DR334749
EST:     CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAG                         GAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
genomic: CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGgttagtagtt ... ttactcttagGAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
EST: gi|124949864|gb|EL025390.1|EL025390
EST:     TGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAG                         GAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
genomic: TGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGgttagtagtt ... ttactcttagGAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
EST: gi|86038992|gb|DR334747.1|DR334747
EST:     CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAG                         GAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
genomic: CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGgttagtagtt ... ttactcttagGAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTT
EST: gi|86038993|gb|DR334748.1|DR334748
EST:     CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAG                         GAGCGTACTCTGGAGGATATTTGGGAAG
genomic: CCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGgttagtagtt ... ttactcttagGAGCGTACTCTGGAGGATATTTGGGAAG