1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGgtaggtcagattgctcaagcatttttattttttttgcgttttctcatttatcttacaacgggtttactgaggattttaaatttcttacacag
species | Arabidopsis thaliana |
transcript | AT3G03120.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCG GTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGGEST: gi|19876194|gb|AU237025.1|AU237025
genomic: TACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGgtaggtcaga ... tcttacacagGTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGG
EST: ACTATACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCG GTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGG
genomic: ACTATACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGgtaggtcaga ... tcttacacagGTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAGCTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGgtaggtcagattgctcaagcatttttattttttttgcgttttctcatttatcttacaacgggtttactgaggattttaaatttcttacacag
- - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT