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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACGACCAGGAGAGCCTGATTGTTCTTATTACATAAGAACTGGTCTTTGTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGTGATCGGGAACTGgtacgttatggtttttgtgttcctctctgtgattttggagtttagagatctgtctggtcggattataatgtcaaagcttttgccttttggaattttgtttttgagctcttctctctcattgtccaatttctag

Basic information

species Arabidopsis thaliana
transcript AT3G02830.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G31370.2 (Glycine max), 5'ss of exon 1
TGAACGACCAGGAGAGCCTGATTGTTCTTATTACATAAGAACTGGTCTTTGTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGTGATCGGGAACTGgtacgttatggtttttgtgt-tcctctctgtgattttggagtttagagatctgtctggtcggattataatgtcaaagcttttgccttttggaattttgtttttgagctcttctctctcattgtccaatttctag
 || || ||||| ||||| |||||||| |||||||| ||||| || ||||||||||||||  | || ||||| || || ||||||| | |  || | ||||||     ||   | | ||| |  | | | | |  |||||  || || |  |  ||   |   || |  |  ||    || ||| | || | || |   |                                  
GGAGCGTCCAGGGGAGCCGGATTGTTCATATTACATGAGAACAGGCCTTTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtataaattgagctatatgtataatgtgtttcaaattggatgtt-gatacataactctccttgttctttttgcagtttttatgcatgttcgcatgtcaatc---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037524|gb|DR333279.1|DR333279
EST:     GTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGTGATCGGGAACTG                         GTTATAGCTACTGCAAGGATGAGAGGAGAATACCCTGAAA-GATTGGTCAG
genomic: GTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGTGATCGGGAACTGgtacgttatg ... caatttctagGTTATAGCTACTGCAAGGATGAGAGGAGAATACCCTGAAAGGATTGGTCAG