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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaactttgttctagtctcgtcctatcacgtagtgttatgcagtaaaattcatgtgcttgtttgcctttctcctatgactgaactcactgaactggattgctgttttatctttttctatgcccctattcaagatactgataccttatcaaatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G02780.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828035|gb|CK117719.1|CK117719
EST:     TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
EST: gi|124831234|gb|EH915673.1|EH915673
EST:     TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATT                         GCCATCTGATGGAAAATA
genomic: TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATA
EST: gi|125247909|gb|EL261994.1|EL261994
EST:     CAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTTGCTGCACAGGGCTTTT
genomic: CAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTT-GCTGCACAGGGCTTTT
EST: gi|116477195|gb|EG519787.1|EG519787
EST:     TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
EST: gi|164236927|gb|ES038652.1|ES038652
EST:     GTGGGGCATGACAGCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: GTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
EST: gi|125220530|gb|EL234615.1|EL234615
EST:     TGATCGTGTTGTGGGGCATGACAGTCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: TGATCGTGTTGTGGGGCATGACAG-CAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
EST: gi|116477196|gb|EG519788.1|EG519788
EST:     TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: TCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
EST: gi|125286494|gb|EL300579.1|EL300579
EST:     TGATCGTGTTGTGGGGCATGACAGCAAGTATAATT                         GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA
genomic: TGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaac ... aaatctgcagGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAGTATAATTgtaagtgaactttgttctagtctcgtcctatcacgtagtgttatgcagtaaaattcatgtgcttgtttgcctttctcctatgactgaactcactgaactggattgctgttttatctttttctatgcccctattcaagatactgataccttatcaaatctgcag

- - - - - - - - - - - - - - - - - - - - -  AGCAAG