Sequence
atgc intronic sequence ATGC exonic sequenceTAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGgtaagctctgctaactttcttttttgctttaacccataatctcctaaagttgcatttgcgctttaggaagtgactggggatggggatacaatcgttacat...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G02630.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G02630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ20436 (Selaginella moellendorffii), 5'ss of exon 1
TAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGgtaagctctgctaactttcttttttgctttaacccataatctcctaaagttgcatttgcgctttaggaagtgactggggatggggatacaatcgttacat
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TCGTCATGGCGATTTGCTCAACAAGTATCTCTACCTCACTGGACGAGTCGACATGAAGCAAATCGAGAAGACGATCCAGTACTTGATCGGTTCTGGAATGgtaaga---gcagagtttcttcttt-------ctcgggaactcaaaagtcggtttttccattcttgcag-------------------------------
upper sequence: AT3G02630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ28417 (Selaginella moellendorffii), 5'ss of exon 1
TAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGgtaagctctgctaactttcttttttgctttaacccataatctcctaaagttgcatttgcgctttaggaagtgactggggatggggatacaatcgttacat
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TCGCCATGGTGATTTACTCAACAAGTATCTCTACCTCACTGGACGAGTCGACATGAAGCAAATCGAGAAGACGATCCAGTACTTGATCGGTTCTGGAATGgtaagagcccagagtttcttctttctcgggaactcaaaagttc-----ggtttttccattcttccag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124998411|gb|EL070680.1|EL070680EST: TGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATG GATCCAAAAACTGAAAACAACCCTTAACTTGGGTTTCATCTACACATCATT
genomic: TGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGgtaagctctg ... atgtccttagGATCCAAAAACTGAAAACAACCCTTA-CTTGGGTTTCATCTACACATCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGgtaagctctgctaactttcttttttgctttaacccataatctcctaaagttgcatttgcgctttaggaagtgactggggatggggatacaatcgttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatacaa