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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGATTACTCCGGGTATGGACAATCTACTGGAAAGgtttgtcctttaccccatcaatctgattggtctgatgatccattatgagttttaggaccaactctcaaaaatctttctttctcttaaatgattgattgtag

Basic information

species Arabidopsis thaliana
transcript AT3G01690.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446615|gb|EG489207.1|EG489207
EST:     ATACGATTACTCCGGGTATGGACAATCTACTGGAAAG                         CCGAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTT
genomic: ATACGATTACTCCGGGTATGGACAATCTACTGGAAAGgtttgtcctt ... ttgattgtagCCGAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTT
EST: gi|125095081|gb|EL152346.1|EL152346
EST:     TGGACAATCTACTGGAAAG                         CCGAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTT
genomic: TGGACAATCTACTGGAAAGgtttgtcctt ... ttgattgtagCCGAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTT
EST: gi|125024575|gb|EL096844.1|EL096844
EST:     ACTACGATTACTCCGGGTATGGACAATCTACTGGAAAG                         CCGAGTGAAGCATAACACGTATGCTGATAT
genomic: A-TACGATTACTCCGGGTATGGACAATCTACTGGAAAGgtttgtcctt ... ttgattgtagCCGAGTGA-GCATAACACGTATGCTGATAT