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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTCTTCCGTTCAGGTTCAACAAACTGATGCCTATGCTCCTCCCAAGGATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAGgtactacatctggttgctgttaacgatattttatacattatttctctgttcatctgtttactttttctcaatttgctatag

Basic information

species Arabidopsis thaliana
transcript AT3G01540.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116438828|gb|EG481420.1|EG481420
EST:     ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAG                         GGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
genomic: ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAGgtactacatc ... tttgctatagGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
EST: gi|116439182|gb|EG481774.1|EG481774
EST:     ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAG                         GGTGGCAGGAGTGGACCGC
genomic: ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAGgtactacatc ... tttgctatagGGTGGCAGGAGTGGACCGC
EST: gi|116438332|gb|EG480924.1|EG480924
EST:     ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAG                         GGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
genomic: ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAGgtactacatc ... tttgctatagGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
EST: gi|301501301|gb|HO206841.1|HO206841
EST:     ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAG                         GGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
genomic: ATGACGATAAGTACTCCAGAGGCTCTGAACGTGTGTCCAGGTTTTCTGAGgtactacatc ... tttgctatagGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
EST: gi|125122516|gb|EL169086.1|EL169086
EST:     CGTGTGTCCAGGTTTTCTGAG                         GGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG
genomic: CGTGTGTCCAGGTTTTCTGAGgtactacatc ... tttgctatagGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGG