Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGACAACAAAGCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggatttgcaggtttatgttctgtttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtag

Basic information

species Arabidopsis thaliana
transcript AT3G01480.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01480.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G015967_T01 (Zea mays), 5'ss of exon 2
TATTGACAACAAAGCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggatttgcaggt--ttatgttctgtttttcaaggaatctgagtat-ttgttttcattgtacttgtgtttggctattgtag------
 || || || ||||| ||  | ||||| || ||||| || |||||||||||||| ||||||||| ||||||| ||||  ||  | ||||| |||||| | ||||    || |   | |  ||| || |     | | |   |  |||| |  | |       |   ||  ||||    | |||   | |     ||      |||  | | |||| ||  |     ||  |       
AATAGATAATAAAGCTATTCGTGAAGTTCAAAAGCCGCTGGAGGATATCACTGACAGCCTCAAGGTTGCTGGTGTTAGAGCCTTGGATTCAGTTGAAAGAgtaagtcattatctaggtttcatcagatgatggaaaatgcatt-tgattacggaaagcagttgccattccgttccaactgtcatcaatttgatttacacctcttttgtggaacttatgaattttcctttaaatgctag

upper sequence: AT3G01480.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G01260.1 (Glycine max), 5'ss of exon 2
TATTGACAACAAAGCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggat-ttgcaggtttatg---ttctgtttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtag
||||||||| || ||||| || |||||||| ||||| ||||| |||||||| || || |||||||||||||| || ||||| || || ||||| ||| | ||||    |     | |  |     ||| | ||||   | | ||||    ||  || | ||  ||  |||   || | | |||||       |  | ||     || ||| ||||| |   |||  | |||||
TATTGACAATAAGGCCATTAGAGAAGTGCAAAAGCCACTTGAAGATATCACGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGAgtaagacataagattaaagattcttgtttt-ttatctgtagaagtgtattgtctatgtggcttgtgcatgggattttatgtttcatttcccttagggataaaaattgatt-tactt-tacgtgg--aatgtag

upper sequence: AT3G01480.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G23850.1 (Glycine max), 5'ss of exon 2
TATTGACAACAAAGCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggatttgcaggtttatgttctgtttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtag
||||||||| || ||||| || |||||||| || || ||||| |||||||| || || |||||||||||||| || ||||| || || ||||| ||| | ||||    |      ||| | | |  ||||  | ||       | |    ||| ||  |    ||||||||   |||  |   |    | |  |||  ||| | ||  | | |  | | |         
TATTGACAATAAGGCCATTAGAGAAGTGCAAAAACCACTTGAAGATATCACAGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTGGAAAGAgtaagacat----aagattaaaga--ttcttgtctat------gcggcttgtgcat--gggattttatgtttcatttcccttaggga-taaaaattgatttactttaca-tggaatgtag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194732|gb|EL209686.1|EL209686
EST:     CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAAGGGAAAAGT
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAA-GGGAAAAGT
EST: gi|124803868|gb|EH892003.1|EH892003
EST:     CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAA
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAA
EST: gi|124937782|gb|EL014489.1|EL014489
EST:     ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
genomic: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
EST: gi|124800448|gb|EH890113.1|EH890113
EST:     CTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
genomic: CTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
EST: gi|125236853|gb|EL250938.1|EL250938
EST:     TGATAGTCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTG
genomic: TGATAG-CCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTG
EST: gi|124710661|gb|EH802063.1|EH802063
EST:     CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGT
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGT
EST: gi|124866379|gb|EH950816.1|EH950816
EST:     ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACAATTGCAGCAAGGGAAAAGTATAATTGT
genomic: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACA-TTGCAGCAAGGGAAAAGTATAATTGT
EST: gi|125213484|gb|EL228316.1|EL228316
EST:     TAGATTCTGTTGAACGG                         AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
genomic: TAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG